EBOLAID001
Raw data
Min-max
|
PCR primer forward |
EBO-1 |
TGGGTAATYATCCTYTTCCA |
6102-6121 | GP |
UGGGUAAUUAUCCUUUUCCA |
6602-6621 | 70 |
80 |
96.74 |
1 |
EBOLAID002
Raw data
Min-max
|
PCR primer reverse |
EBO-2 |
ACGACACCTTCAGCRAAAGT |
6561-6580 | GP |
ACUUUCGCUGAAGGUGUCGU |
7061-7080 | 55 |
60 |
95.52 |
1 |
EBOLAID003
Raw data
Min-max
|
PCR primer forward |
EBO-3 |
GTTTGTCGKGACAAACTGTC |
6192-6211 | GP |
GUUUGUCGUGACAAACUGUC |
6692-6711 | 50 |
60 |
93.74 |
1 |
EBOLAID004
Raw data
Min-max
|
PCR primer reverse |
EBO-4 |
TGGAARGCWAAGTCWCCGG |
6481-6499 | GP |
CCGGAGACUUUGCCUUCCA |
6981-6999 | 47.37 |
40 |
95.33 |
1 |
EBOLAID005
Raw data
Min-max
|
PCR primer forward |
GAB-1 |
GAATGTAGGTAGAACCTTCGG |
13251-13271 | L |
GAAUGUAGGUAGAACCUUCGG |
14291-14311 | 52.38 |
80 |
95.19 |
1 |
EBOLAID006
Raw data
Min-max
|
PCR primer reverse |
GAB-2 |
GCATATAACACTGTGGGATTG |
13583-13603 | L |
CAAUCCCACAGUGUUAUAUGC |
14623-14643 | 66.67 |
40 |
96.66 |
1 |
EBOLAID007
Raw data
Min-max
|
PCR primer forward |
EBO-BP1 |
AATGGGCTGAAAATTGCTACAATC |
6346-6369 | GP |
AAUGGGCUGAAAACUGCUACAAUC |
6846-6869 | 75 |
60 |
98.83 |
2 |
EBOLAID008
Raw data
Min-max
|
PCR primer reverse |
EBO-GP2 |
TTTTTTTAGTTTCCCAGAAGGCCCACT |
6898-6924 | GP |
AGUGGGCCUUCUGGGAAACUAAAAAAA |
7398-7424 | 81.48 |
80 |
98.19 |
2 |
EBOLAID009
Raw data
Min-max
|
PCR primer forward |
ZAI-NP1 |
GGACCGCCAAGGTAAAAAATGA |
1275-1296 | NP |
GGACCGCCAAGGUAAAAAAUGA |
1376-1397 | 68.18 |
80 |
96.46 |
2 |
EBOLAID010
Raw data
Min-max
|
PCR primer reverse |
ZAI-NP2 |
GCATATTGTTGGAGTTGCTTCTCAGC |
1517-1542 | NP |
GCUGAGAAGCAACUCCAACAAUAUGC |
1618-1643 | 65.38 |
80 |
97.07 |
2 |
EBOLAID011
Raw data
Min-max
|
PCR primer forward |
|
ATCGGAATTTTCTTTCTCATTGAAAGA |
13214-13241 | L |
AUCGGAACUUUUCUUUCUCAUUGAAAGA |
14254-14281 | 71.43 |
80 |
97.27 |
3;4 |
EBOLAID012
Raw data
Min-max
|
PCR primer reverse |
|
ATGTGGTGGATTATAATAATCACTGACATG(...) |
13600-13632 | L |
AUGCAUGUCAGUGAUUAUUAUAAUCCACCA(...) |
14640-14672 | 81.82 |
80 |
97.78 |
3;4 |
EBOLAID013
Raw data
Min-max
|
PCR primer forward |
EBOGP-1Df |
TGGGCTGAAAAYTGCTACAATC |
6348-6369 | GP |
UGGGCUGAAAACUGCUACAAUC |
6848-6869 | 77.27 |
60 |
99.01 |
5 |
EBOLAID014
Raw data
Min-max
|
PCR primer reverse |
EBOGP-1Dr |
CTTTGTGMACATASCGGCAC |
6440-6459 | GP |
GUGCCGGUAUGUGCACAAAG |
6940-6959 | 80 |
80 |
98.17 |
5 |
EBOLAID015
Raw data
Min-max
|
Probe |
EBOGP-1DZPrb |
CTACCAGCAGCGCCAGACGG |
6402-6421 | GP |
CUACCAGCAGCGCCAGACGG |
6902-6921 | 60 |
80 |
96 |
5 |
EBOLAID016
Raw data
Min-max
|
PCR primer forward |
FILO-A |
ATCGGAATTTTTCTTTCTCATT |
13214-13235 | L |
AUCGGAACUUUUCUUUCUCAUU |
14254-14275 | 72.73 |
80 |
97.53 |
2;1;5;6 |
EBOLAID017
Raw data
Min-max
|
PCR primer reverse |
FILO-B |
ATGTGGTGGGTTATAATAATCACTGACATG |
13603-13632 | L |
CAUGUCAGUGAUUAUUAUAAUCCACCACAU |
14643-14672 | 83.33 |
80 |
97.82 |
2;1;5;6;7 |
EBOLAID018
Raw data
Min-max
|
PCR primer forward |
EBOORF UP |
ATGGATTCTCGTCCTCAGAAAAT |
470-492 | NP |
AUGGAUUCUCGUCCUCAGAAAAU |
571-593 | 26.09 |
0 |
91.79 |
8 |
EBOLAID019
Raw data
Min-max
|
PCR primer reverse |
EBOORF DP |
TCACTGATGATGTTGCAGGATT |
2668-2689 | NP |
AAUCCUGCAACAUCAUCAGUGA |
2814-2835 | 40.91 |
40 |
94.54 |
8 |
EBOLAID020
Raw data
Min-max
|
PCR primer forward |
ENZ FP |
ATGATGGAAGCTACGGCG |
1854-1871 | NP |
AUGAUGGAAGCUACGGCG |
1955-1972 | 27.78 |
0 |
90.72 |
8 |
EBOLAID021
Raw data
Min-max
|
PCR primer reverse |
ENZ RP |
AGGACCAAGTCATCTGGTGC |
1904-1923 | NP |
GCACCAGAUGACUUGGUCCU |
2005-2024 | 40 |
40 |
93.71 |
8 |
EBOLAID022
Raw data
Min-max
|
Probe |
ENZ P |
CCAGAGTTACTCGGAAAACGGCATG |
1876-1900 | NP |
CCAGAGUUACUCGGAAAACGGCAUG |
1977-2001 | 8 |
0 |
88.15 |
8 |
EBOLAID023
Raw data
Min-max
|
PCR primer forward |
SudZaiNP1(+) |
GAGACAACGGAAGCTAATGC |
890-909 | NP |
GAGACAACUGAAGCUAAUGC |
991-1010 | 80 |
100 |
96.93 |
9 |
EBOLAID024
Raw data
Min-max
|
PCR primer reverse |
SudZaiNP1(-) |
AACGGAAGATCACCATCATG |
1057-1076 | NP |
CAUGAUGGUGAUUUUCCGUU |
1158-1177 | 70 |
80 |
97.34 |
9 |
EBOLAID025
Raw data
Min-max
|
PCR primer forward |
SudZaiNP2(+) |
GGTCAGTTTCTATCCTTTGC |
911-930 | NP |
GGUCAGUUUCUCUCCUUUGC |
1012-1031 | 70 |
100 |
95.84 |
9 |
EBOLAID026
Raw data
Min-max
|
PCR primer reverse |
SudZaiNP2(-) |
CATGTGTCCAACTGATTGCC |
1041-1060 | NP |
GGCAAUCAGUAGGACACAUG |
1142-1161 | 80 |
80 |
98.49 |
9 |
EBOLAID027
Raw data
Min-max
|
PCR primer forward |
EBsp5 |
TTYCCTAGCAAYATGATGG |
13345-13363 | L |
UUUCCUAGCAAUAUGAUGG |
14385-14403 | 78.95 |
100 |
98.49 |
10;4 |
EBOLAID028
Raw data
Min-max
|
PCR primer reverse |
EBsp3 |
TATAATAATCACTGACATGCAT |
13600-13621 | L |
AUGCAUGUCAGUGAUUAUUAUA |
14640-14661 | 86.36 |
80 |
98.79 |
10;4 |
EBOLAID029
Raw data
Min-max
|
PCR primer forward |
evR3 |
TCTTGCAAGGACCGCCAAGGTAAAAA |
1267-1292 | NP |
UCUUGCAAGGACCGCCAAGGUAAAAA |
1368-1393 | 57.69 |
60 |
94.84 |
11 |
EBOLAID030
Raw data
Min-max
|
PCR primer reverse |
evF3 |
TTCAAAAGTCGGGCGAAAGGAGCATA |
1346-1371 | NP |
UAUGCUCCUUUCGCCCGACUUUUGAA |
1447-1472 | 65.38 |
100 |
95.96 |
11 |
EBOLAID031
Raw data
Min-max
|
PCR primer forward |
F3 |
AATAACGAAAGGAGTCCCTA |
18338-18357 | 3'UTR |
AAUAACGAAAGGAGUCCCUA |
19600-19616 | 5.88 |
0 |
88.07 |
12 |
EBOLAID032
Raw data
Min-max
|
PCR primer reverse |
B3 |
TTGTATCAATATCCTGTCAG |
18532-18551 | 3'UTR |
UUGUAUCAAUAUCCUGUCAG |
19834-19853 | 5 |
20 |
88.79 |
12 |
EBOLAID033
Raw data
Min-max
|
PCR primer forward |
Ebola-1F |
GATGCAGTATTCGAGCCTAATGTTCTAG |
13063-13090 | L |
GAUGCAGUAUUCGAGCCUAAUGUUCUAG |
14103-14130 | 71.43 |
60 |
97.22 |
13 |
EBOLAID034
Raw data
Min-max
|
PCR primer reverse |
Ebola-1R |
GTGTTTGAACATTGCGAGTCGGATAAG |
13280-13306 | L |
CUUAUCCGACUCGCAAUGUUCAAACAC |
14320-14346 | 59.26 |
60 |
96.22 |
13 |
EBOLAID035
Raw data
Min-max
|
Probe |
Ebola-P |
ACTCGAGTATCTACTACCACAATATCGGAA(...) |
13191-13221 | L |
ACUCGAGUAUCUACUACCACAAUAUCGGAA(...) |
14231-14261 | 45.16 |
60 |
94.9 |
13 |
EBOLAID036
Raw data
Min-max
|
PCR primer forward |
FiloA2.4 |
AAGCATTTCCTAGCAATATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
14380-14404 | 80 |
100 |
98.3 |
7 |
EBOLAID037
Raw data
Min-max
|
PCR primer forward |
FiloA2.2 |
AAGCCTTTCCTAGCAACATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
14380-14404 | 80 |
100 |
98.3 |
7 |
EBOLAID038
Raw data
Min-max
|
PCR primer forward |
FiloA2.3 |
AAGCATTCCCTAGCAACATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
14380-14404 | 80 |
100 |
98.3 |
7 |
EBOLAID039
Raw data
Min-max
|
PCR primer reverse |
FILO B-Ra |
GTGAGGAGGGCTATAAAAGTCACTGACATG |
13603-13632 | L |
CAUGUCAGUGAUUAUUAUAAUCCACCACAU |
14643-14661 | 89.47 |
80 |
99.02 |
7 |
EBOLAID040
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
FAMEBOSu |
CCGAAATCATCACTIGTITGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
14451-14473 | 73.91 |
80 |
98.32 |
7 |
EBOLAID041
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
FAMEBOg |
CCAAAATCATCACTIGTGTGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
14451-14476 | 73.08 |
80 |
97.61 |
7 |
EBOLAID042
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
FAMMBG |
CCTATGCTTGCTGAATTGTGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
14451-14460 | 70 |
40 |
98.19 |
7 |
EBOLAID043
Raw data
Min-max
|
PCR primer forward |
F565 |
TCTGACATGGATTACCACAAGATC |
518-541 | NP |
UCUGACAUGGAUUACCACAAGAUC |
619-642 | 54.17 |
60 |
94.63 |
14 |
EBOLAID044
Raw data
Min-max
|
PCR primer reverse |
R640 |
GGATGACTCTTTGCCGAACAATC |
571-593 | NP |
GAUUGUUCGGCAAAGAGUCAUCC |
672-694 | 52.17 |
60 |
97.01 |
14 |
EBOLAID045
Raw data
Min-max
|
Probe (FAM&MGB) |
p597S |
AGGTCTGTCCGTTCAA |
550-565 | NP |
AGGUCUGUCCGUUCAA |
651-666 | 56.25 |
60 |
95.17 |
14 |
EBOLAID046
Raw data
Min-max
|
PCR primer forward |
F2000 |
TTTTCAATCCTCAACCGTAAGGC |
7781-7803 | GP |
UUUUCAAUCCUCAACCGUAAGGC |
8339-8361 | 52.17 |
80 |
95.05 |
14 |
EBOLAID047
Raw data
Min-max
|
PCR primer reverse |
R2079 |
CAGTCCGGTCCCAGAATGTG |
7841-7860 | GP |
CACAUUCUGGGACCGGACUG |
8399-8418 | 55 |
40 |
94.71 |
14 |
EBOLAID048
Raw data
Min-max
|
Probe (FAM&TAMRA) |
p2058A |
CATGTGCCGCCCCATCGCTGC |
7819-7839 | GP |
GCAGCGAUGGGGCGGCACAUG |
8377-8397 | 57.14 |
80 |
95.14 |
14 |
EBOLAID049
Raw data
Min-max
|
PCR primer forward |
PanFilo-L1 |
ATMGRAAYTTTTCYTTYTCWYT |
13214-13235 | L |
AUCGGAACUUUUCUUUCUCAUU |
14254-14272 | 73.68 |
80 |
97.56 |
15 |
EBOLAID050
Raw data
Min-max
|
PCR primer reverse |
Pan?lo-L2 |
TGWGGHGGRYTATAAWARTCACTDACAT |
13604-13631 | L |
AUGUCAGUGAUUAUUAUAAUCCACCACA |
14644-14671 | 82.14 |
60 |
97.67 |
15 |
EBOLAID051
Raw data
Min-max
|
PCR primer forward |
PanFilo-L3 |
GCNAARGCMTTYCCHAGYAAYATGATGG |
13336-13363 | L |
GCUAAAGCAUUUCCUAGCAAUAUGAUGG |
14379-14403 | 80 |
100 |
98.3 |
15 |
EBOLAID052
Raw data
Min-max
|
PCR primer reverse |
Pan?lo-L4 |
ATAAWARTCACTDACATGCATRTARCA |
13594-13620 | L |
UGUUAUAUGCAUGUCAGUGAUUAUUAU |
14634-14660 | 85.19 |
100 |
98.71 |
15 |
EBOLAID053
Raw data
Min-max
|
PCR primer forward |
KGH-F |
GTCGTTCCAACAATCGAGCG |
10243-10262 | VP24 |
GUCGUUCCAACAAUCGAGCG |
11146-11165 | 10 |
20 |
91.17 |
16 |
EBOLAID054
Raw data
Min-max
|
PCR primer forward |
KGH-R |
CGTCCCGTAGCTTTRGCCAT |
10345-10364 | VP24 |
AUGGCUAAAGCUACGGGACG |
11248-11267 | 70 |
60 |
95.31 |
16 |
EBOLAID055
Raw data
Min-max
|
PCR primer forward |
ZEBOV-F |
TGGAAAAAACATTAAGAGAACACTTGC |
847-873 | NP |
UGGAAAAAACAUUAAGAGAACACUUGC |
948-974 | 62.96 |
60 |
94.75 |
17 |
EBOLAID056
Raw data
Min-max
|
PCR primer reverse |
ZEBOV-R |
AGGAGAGAAACTGACCGGCAT |
906-926 | NP |
AUGCCGGUCAGUUUCUCUCCU |
1007-1027 | 66.67 |
80 |
95.38 |
17 |
EBOLAID057
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
ZEBOV-P |
CATGCCGGAAGAGGAGACAACTGAAGC |
877-903 | NP |
CAUGCCGGAAGAGGAGACAACUGAAGC |
978-1004 | 77.78 |
100 |
96.76 |
17 |
EBOLAID058
Raw data
Min-max
|
PCR primer forward |
rt_EBOV-f |
ATTTGAATGGGGTCCAATTGCC |
13997-14018 | L |
AUUUGAAUGGGGUCCAAUUGCC |
15037-15058 | 68.18 |
80 |
96.78 |
22 |
EBOLAID059
Raw data
Min-max
|
PCR primer reverse |
rt_EBOL-r |
AAGCAGTRCCTATACTAGCCA |
14090-14110 | L |
UGGCUAGUAUAGGCACUGCUU |
15130-15150 | 71.43 |
60 |
95.77 |
22 |
EBOLAID060
Raw data
Min-max
|
Probe (Taqman) |
EBOV_prb |
AGTCCCTTAAAACGGCTACAAGAATGGGAC |
14021-14050 | L |
AGUCCCUUAAAACGGCUACAAGAAUGGCAC |
15061-15087 | 62.96 |
60 |
95.19 |
22 |
EBOLAID061
Raw data
Min-max
|
Primer forward |
F3 |
GACGGGAGTGAGTGTCTACC |
6387-6406 | GP |
GACGGGAGUGAGUGUCUACC |
6887-6906 | 70 |
80 |
96.64 |
23 |
EBOLAID062
Raw data
Min-max
|
Primer reverse |
B3 |
AGCTTGGGGCAGTATCAGAA |
6586-6605 | GP |
UUCUGAUACUGCCCCAAGCU |
7086-7105 | 45 |
60 |
94.22 |
23 |
EBOLAID063
Raw data
Min-max
|
Primer reverse |
FL |
GCACATACCGGCACC |
6439-6453 | GP |
GGUGCCGGUAUGUGC |
6939-6953 | 80 |
80 |
97.98 |
23 |
EBOLAID064
Raw data
Min-max
|
Primer forward |
BL |
CTTCCTGTATGATCGACTTGCTTC |
6515-6538 | GP |
CUUCCUGUAUGAUCGACUUGCUUC |
7015-7038 | 70.83 |
80 |
97.31 |
23 |
EBOLAID065
Raw data
Min-max
|
Primer forward |
F3 |
CAATAAACAACTATTTAAATAAC |
18321-18343 | 3'UTR |
CAAUAAACAACUAUUUAAAUAAC |
19561-19573 | 15.38 |
20 |
88.73 |
24 |
EBOLAID066
Raw data
Min-max
|
Primer reverse |
B3 |
CTGGCAAGATATTGATACAACA |
18530-18551 | 3'UTR |
UGUUGUAUCAAUAUCCUGUCAG |
19832-19846 | 6.67 |
0 |
91.53 |
24 |
EBOLAID067
Raw data
Min-max
|
Primer reverse |
LF |
AATTTTTTGATTATCACGC |
18388-18406 | 3'UTR |
GCGUGAUAAUCAAAAAAUU |
19647-19665 | 10.53 |
80 |
94 |
24 |
EBOLAID068
Raw data
Min-max
|
Primer forward |
F3 |
TGAAGTCAAGAAGCGTGATGG |
787-807 | NP |
UGAAGUCAAGAAGCGUGAUGG |
888-908 | 33.33 |
40 |
91.2 |
24 |
EBOLAID069
Raw data
Min-max
|
Primer reverse |
B3 |
AGTCCTTGCTCTGCATGTACT |
1000-1020 | NP |
AGUACAUGCAGAGCAAGGACU |
1101-1121 | 57.14 |
60 |
96.88 |
24 |
EBOLAID070
Raw data
Min-max
|
Primer reverse |
LF |
TGTTTTTTCCACTAGATACTGCTGG |
833-857 | NP |
CCAGCAGUAUCUAGUGGAAAAAACA |
934-958 | 40 |
40 |
92.2 |
24 |
EBOLAID071
Raw data
Min-max
|
Primer forward |
LB |
TCCTTCCGAAATTGGTAGTAGGA |
939-961 | NP |
UCCUUCCGAAAUUGGUAGUAGGA |
1040-1062 | 60.87 |
60 |
95.37 |
24 |
EBOLAID072
Raw data
Min-max
|
Primer forward |
EBOV-F3 |
TGGTTCAAGTGCACAGTCAA |
7086-7105 | GP |
UGGUUCAAGUGCACAGUCAA |
7586-7605 | 40 |
0 |
94.81 |
25 |
EBOLAID073
Raw data
Min-max
|
Primer reverse |
EBOV-B3 |
TGTCTGCTCTACGGTGATGT |
7255-7274 | GP |
ACAUCACCGCAGAACAGACA |
7755-7774 | 20 |
40 |
90.14 |
25 |
EBOLAID074
Raw data
Min-max
|
Primer reverse |
EBOV-LF |
GCAAGGGTTGTCAGATGCG |
7125-7143 | GP |
CGCAUCUAACAACCCUUGC |
7625-7643 | 10.53 |
20 |
92.15 |
25 |
EBOLAID075
Raw data
Min-max
|
Primer forward |
EBOV-LB |
ATAATACACCCGTGTATAAACTTGAC |
7203-7228 | GP |
AUAAUACACCCGUGUAUAAACUUGAC |
7703-7728 | 7.69 |
0 |
92.33 |
25 |
EBOLAID076
Raw data
Min-max
|
PCR primer forward |
ZEBOV Forward |
CGAACTTGACCATCTTGGACTTG |
1552-1574 | NP |
CGAACUUGACCAUCUUGGACUUG |
1653-1675 | 56.52 |
60 |
95.44 |
26 |
EBOLAID077
Raw data
Min-max
|
PCR primer reverse |
ZEBOV Reverse |
TCCTCGTCGTCCTCGTCTAGAT |
1929-1950 | NP |
AUCUAGACGAGGACGACGAGGA |
2030-2051 | 54.55 |
40 |
95.06 |
26 |
EBOLAID078
Raw data
Min-max
|
Primer forward |
EBO-RPA-F |
TAGTAGGAGAAAAGGCTTGCCTTGAGAAGG(...) |
954-983 | NP |
UAGUAGGAGAAAAGGCUUGCCUUGAGAAGG |
1055-1084 | 66.67 |
60 |
95.83 |
27 |
EBOLAID079
Raw data
Min-max
|
Primer reverse |
EBO-RPA-R |
TGTTCGCATCAAACGGAAAATCACCATCAT(...) |
1057-1087 | NP |
CAUGAUGGUGAUUUUCCGUUUGAUGCGAAC(...) |
1158-1188 | 67.74 |
80 |
97.5 |
27 |
EBOLAID080
Raw data
Min-max
|
Probe |
EBO-RPA-P |
TCAAGTACATGCAGAGCAAGGACTGATACA(...) |
997-1028 | NP |
UCAAGUACAUGCAGAGCAAGGACUGAUACA(...) |
1098-1129 | 62.5 |
80 |
96.96 |
27 |