Complete list of oligonucleotides

The table describes all information for each oligonucleotide retrieved from peer-reviewed publications.

Click on the oligonucleotide reference number to open a separate page with additional information.

Database reference Type of target Techniques Target Original name Target length Amplicon length Sequence (5-3) Position in reference genome Genomic region Sequence in reference genome Related publication
Database reference Type of target Techniques Target Original name Target length Amplicon length Sequence (5-3) Position in reference genome Genomic region Sequence in reference genome Related publication
EBOLAID001 PCR primer pair Reverse transcriptase PCR and nested PCR PCR primer forward EBO-1 20 479 TGGGTAATYATCCTYTTCCA 6102-6121 GP UGGGUAAUUAUCCUUUUCCA 1
EBOLAID002 PCR primer pair Reverse transcriptase PCR and nested PCR PCR primer reverse EBO-2 20 479 ACGACACCTTCAGCRAAAGT 6561-6580 GP ACUUUCGCUGAAGGUGUCGU 1
EBOLAID003 PCR primer pair Reverse transcription PCR and nested PCR PCR primer forward EBO-3 20 308 GTTTGTCGKGACAAACTGTC 6192-6211 GP GUUUGUCGUGACAAACUGUC 1
EBOLAID004 PCR primer pair Reverse transcription PCR and nested PCR PCR primer reverse EBO-4 19 308 TGGAARGCWAAGTCWCCGG 6481-6499 GP CCGGAGACUUUGCCUUCCA 1
EBOLAID005 PCR primer pair Reverse transcription PCR and nested PCR PCR primer forward GAB-1 21 353 GAATGTAGGTAGAACCTTCGG 13251-13271 L GAAUGUAGGUAGAACCUUCGG 1
EBOLAID006 PCR primer pair Reverse transcription PCR and nested PCR PCR primer reverse GAB-2 21 353 GCATATAACACTGTGGGATTG 13583-13603 L CAAUCCCACAGUGUUAUAUGC 1
EBOLAID007 PCR primer pair Reverse transcription PCR PCR primer forward EBO-BP1 24 579 AATGGGCTGAAAATTGCTACAATC 6346-6369 GP AAUGGGCUGAAAACUGCUACAAUC 2
EBOLAID008 PCR primer pair Reverse transcription PCR PCR primer reverse EBO-GP2 27 579 TTTTTTTAGTTTCCCAGAAGGCCCACT 6898-6924 GP AGUGGGCCUUCUGGGAAACUAAAAAAA 2
EBOLAID009 PCR primer pair Reverse transcription PCR PCR primer forward ZAI-NP1 22 268 GGACCGCCAAGGTAAAAAATGA 1275-1296 NP GGACCGCCAAGGUAAAAAAUGA 2
EBOLAID010 PCR primer pair Reverse transcription PCR PCR primer reverse ZAI-NP2 26 268 GCATATTGTTGGAGTTGCTTCTCAGC 1517-1542 NP GCUGAGAAGCAACUCCAACAAUAUGC 2
EBOLAID011 PCR primer pair Reverse transcription PCR PCR primer forward 27 419 ATCGGAATTTTCTTTCTCATTGAAAGA 13214-13241 L AUCGGAACUUUUCUUUCUCAUUGAAAGA 3; 4;
EBOLAID012 PCR primer pair Reverse transcription PCR PCR primer reverse 33 419 ATGTGGTGGATTATAATAATCACTGACATGCAT 13600-13632 L AUGCAUGUCAGUGAUUAUUAUAAUCCACCACAU 3; 4;
EBOLAID013 PCR primer pair Reverse transcription PCR PCR primer forward EBOGP-1Df 22 112 TGGGCTGAAAAYTGCTACAATC 6348-6369 GP UGGGCUGAAAACUGCUACAAUC 5
EBOLAID014 PCR primer pair Reverse transcription PCR PCR primer reverse EBOGP-1Dr 20 112 CTTTGTGMACATASCGGCAC 6440-6459 GP GUGCCGGUAUGUGCACAAAG 5
EBOLAID015 Probe Reverse transcription PCR Probe EBOGP-1DZPrb 20 CTACCAGCAGCGCCAGACGG 6402-6421 GP CUACCAGCAGCGCCAGACGG 5
EBOLAID016 PCR primer pair Reverse transcription PCR PCR primer forward FILO-A 22 419 ATCGGAATTTTTCTTTCTCATT 13214-13235 L AUCGGAACUUUUCUUUCUCAUU 2; 1; 5; 6;
EBOLAID017 PCR primer pair Reverse transcription PCR PCR primer reverse FILO-B 30 419 ATGTGGTGGGTTATAATAATCACTGACATG 13603-13632 L CAUGUCAGUGAUUAUUAUAAUCCACCACAU 2; 1; 5; 6; 7;
EBOLAID018 PCR primer pair PCR PCR primer forward EBOORF UP 23 2220 ATGGATTCTCGTCCTCAGAAAAT 470-492 NP AUGGAUUCUCGUCCUCAGAAAAU 8
EBOLAID019 PCR primer pair PCR PCR primer reverse EBOORF DP 22 2220 TCACTGATGATGTTGCAGGATT 2668-2689 NP AAUCCUGCAACAUCAUCAGUGA 8
EBOLAID020 PCR primer pair Real-time PCR PCR primer forward ENZ FP 18 70 ATGATGGAAGCTACGGCG 1854-1871 NP AUGAUGGAAGCUACGGCG 8
EBOLAID021 PCR primer pair Real-time PCR PCR primer reverse ENZ RP 20 70 AGGACCAAGTCATCTGGTGC 1904-1923 NP GCACCAGAUGACUUGGUCCU 8
EBOLAID022 Probe Real-time PCR Probe ENZ P 25 CCAGAGTTACTCGGAAAACGGCATG 1876-1900 NP CCAGAGUUACUCGGAAAACGGCAUG 8
EBOLAID023 PCR primer pair Reverse transcription PCR PCR primer forward SudZaiNP1(+) 20 187 GAGACAACGGAAGCTAATGC 890-909 NP GAGACAACUGAAGCUAAUGC 9
EBOLAID024 PCR primer pair Reverse transcription PCR PCR primer reverse SudZaiNP1(-) 20 187 AACGGAAGATCACCATCATG 1057-1076 NP CAUGAUGGUGAUUUUCCGUU 9
EBOLAID025 PCR primer pair Reverse transcription PCR PCR primer forward SudZaiNP2(+) 20 150 GGTCAGTTTCTATCCTTTGC 911-930 NP GGUCAGUUUCUCUCCUUUGC 9; 18;
EBOLAID026 PCR primer pair Reverse transcription PCR PCR primer reverse SudZaiNP2(-) 20 150 CATGTGTCCAACTGATTGCC 1041-1060 NP GGCAAUCAGUAGGACACAUG 9; 18;
EBOLAID027 PCR primer pair SYBR Green real time PCR PCR primer forward EBsp5 19 277 TTYCCTAGCAAYATGATGG 13345-13363 L UUUCCUAGCAAUAUGAUGG 4; 10;
EBOLAID028 PCR primer pair SYBR Green real time PCR PCR primer reverse EBsp3 22 277 TATAATAATCACTGACATGCAT 13600-13621 L AUGCAUGUCAGUGAUUAUUAUA 4; 10;
EBOLAID029 RT-tHDA primer pair Isothermal reverse transcription-thermophilic helicase-dependent amplification (RT-tHDA) Primer forward evR3 26 105 TCTTGCAAGGACCGCCAAGGTAAAAA 1267-1292 NP UCUUGCAAGGACCGCCAAGGUAAAAA 11
EBOLAID030 RT-tHDA primer pair Isothermal reverse transcription-thermophilic helicase-dependent amplification (RT-tHDA) Primer reverse evF3 26 105 TTCAAAAGTCGGGCGAAAGGAGCATA 1346-1371 NP UAUGCUCCUUUCGCCCGACUUUUGAA 11
EBOLAID031 RT-LAMP primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward F3 20 214 AATAACGAAAGGAGTCCCTA 18338-18357 3'UTR AAUAACGAAAGGAGUCCCUA 12
EBOLAID032 RT-LAMP primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse B3 20 214 TTGTATCAATATCCTGTCAG 18532-18551 3'UTR UUGUAUCAAUAUCCUGUCAG 12
EBOLAID033 PCR primer pair Reverse transcription PCR Enzyme Hybridization Assay PCR primer forward Ebola-1F 28 244 GATGCAGTATTCGAGCCTAATGTTCTAG 13063-13090 L GAUGCAGUAUUCGAGCCUAAUGUUCUAG 13
EBOLAID034 PCR primer pair Reverse transcription PCR Enzyme Hybridization Assay PCR primer reverse Ebola-1R 27 244 GTGTTTGAACATTGCGAGTCGGATAAG 13280-13306 L CUUAUCCGACUCGCAAUGUUCAAACAC 13
EBOLAID035 Probe Reverse transcription PCR Enzyme Hybridization Assay Probe Ebola-P 31 ACTCGAGTATCTACTACCACAATATCGGAAC 13191-13221 L ACUCGAGUAUCUACUACCACAAUAUCGGAAC 13
EBOLAID036 PCR primer pair Reverse transcription PCR PCR primer forward FiloA2.4 25 293 AAGCATTTCCTAGCAATATGATGGT 13340-13364 L AAGCAUUUCCUAGCAAUAUGAUGGU 7
EBOLAID037 PCR primer pair Reverse transcription PCR PCR primer forward FiloA2.2 25 AAGCCTTTCCTAGCAACATGATGGT 13340-13364 L AAGCAUUUCCUAGCAAUAUGAUGGU 7
EBOLAID038 PCR primer pair Reverse transcription PCR PCR primer forward FiloA2.3 25 AAGCATTCCCTAGCAACATGATGGT 13340-13364 L AAGCAUUUCCUAGCAAUAUGAUGGU 7
EBOLAID039 PCR primer pair Reverse transcription PCR PCR primer reverse FILO B-Ra 30 GTGAGGAGGGCTATAAAAGTCACTGACATG 13603-13632 L CAUGUCAGUGAUUAUUAUAAUCCACCACAU 7
EBOLAID040 Probe Reverse transcription PCR Probe (FAM & BlackHole Quencher 1) FAMEBOSu 26 CCGAAATCATCACTIGTITGGTGCCA 13411-13436 L UGGCACCACACAAGUGAUGAUUUUGG 7
EBOLAID041 Probe Reverse transcription PCR Probe (FAM & BlackHole Quencher 1) FAMEBOg 26 CCAAAATCATCACTIGTGTGGTGCCA 13411-13436 L UGGCACCACACAAGUGAUGAUUUUGG 7
EBOLAID042 Probe Reverse transcription PCR Probe (FAM & BlackHole Quencher 1) FAMMBG 26 CCTATGCTTGCTGAATTGTGGTGCCA 13411-13436 L UGGCACCACACAAGUGAUGAUUUUGG 7
EBOLAID043 PCR primer pair Real-time PCR PCR primer forward F565 24 76 TCTGACATGGATTACCACAAGATC 518-541 NP UCUGACAUGGAUUACCACAAGAUC 14; 20;
EBOLAID044 PCR primer pair Real-time PCR PCR primer reverse R640 23 76 GGATGACTCTTTGCCGAACAATC 571-593 NP GAUUGUUCGGCAAAGAGUCAUCC 14; 20;
EBOLAID045 Probe Real-time PCR Probe (FAM&MGB) p597S 16 AGGTCTGTCCGTTCAA 550-565 NP AGGUCUGUCCGUUCAA 14
EBOLAID046 PCR primer pair Real-time PCR PCR primer forward F2000 23 80 TTTTCAATCCTCAACCGTAAGGC 7781-7803 GP UUUUCAAUCCUCAACCGUAAGGC 14
EBOLAID047 PCR primer pair Real-time PCR PCR primer reverse R2079 20 80 CAGTCCGGTCCCAGAATGTG 7841-7860 GP CACAUUCUGGGACCGGACUG 14
EBOLAID048 Probe Real-time PCR Probe (FAM&TAMRA) p2058A 21 CATGTGCCGCCCCATCGCTGC 7819-7839 GP GCAGCGAUGGGGCGGCACAUG 14
EBOLAID049 PCR primer pair Reverse transcription PCR PCR primer forward PanFilo-L1 22 418 ATMGRAAYTTTTCYTTYTCWYT 13214-13235 L AUCGGAACUUUUCUUUCUCAUU 15
EBOLAID050 PCR primer pair Reverse transcription PCR PCR primer reverse Pan?lo-L2 28 418 TGWGGHGGRYTATAAWARTCACTDACAT 13604-13631 L AUGUCAGUGAUUAUUAUAAUCCACCACA 15
EBOLAID051 PCR primer pair Reverse transcription PCR PCR primer forward PanFilo-L3 28 285 GCNAARGCMTTYCCHAGYAAYATGATGG 13336-13363 L GCUAAAGCAUUUCCUAGCAAUAUGAUGG 15
EBOLAID052 PCR primer pair Reverse transcription PCR PCR primer reverse Pan?lo-L4 27 285 ATAAWARTCACTDACATGCATRTARCA 13594-13620 L UGUUAUAUGCAUGUCAGUGAUUAUUAU 15
EBOLAID053 PCR primer pair PCR primer forward KGH-F 20 122 GTCGTTCCAACAATCGAGCG 10243-10262 VP24 GUCGUUCCAACAAUCGAGCG 16
EBOLAID054 PCR primer pair PCR primer reverse KGH-R 20 122 CGTCCCGTAGCTTTRGCCAT 10345-10364 VP24 AUGGCUAAAGCUACGGGACG 16
EBOLAID055 PCR primer pair High-throughput RNA extraction/quantitative RT-PCR PCR primer forward ZEBOV-F 27 80 TGGAAAAAACATTAAGAGAACACTTGC 847-873 NP UGGAAAAAACAUUAAGAGAACACUUGC 17; 21;
EBOLAID056 PCR primer pair High-throughput RNA extraction/quantitative RT-PCR PCR primer reverse ZEBOV-R 21 80 AGGAGAGAAACTGACCGGCAT 906-926 NP AUGCCGGUCAGUUUCUCUCCU 17; 21;
EBOLAID057 Probe High-throughput RNA extraction/quantitative RT-PCR Probe (FAM & BlackHole Quencher) ZEBOV-P 27 CATGCCGGAAGAGGAGACAACTGAAGC 877-903 NP CAUGCCGGAAGAGGAGACAACUGAAGC 17; 21;
EBOLAID058 PCR primer pair Real-time PCR PCR primer forward rt_EBOV-f 22 ATTTGAATGGGGTCCAATTGCC 13997-14018 L AUUUGAAUGGGGUCCAAUUGCC 22
EBOLAID059 PCR primer pair Real-time PCR PCR primer reverse rt_EBOL-r 21 AAGCAGTRCCTATACTAGCCA 14090-14110 L UGGCUAGUAUAGGCACUGCUU 22
EBOLAID060 Probe Real-time PCR Probe (Taqman) EBOV_prb 30 AGTCCCTTAAAACGGCTACAAGAATGGGAC 14021-14050 L AGUCCCUUAAAACGGCUACAAGAAUGGCAC 22
EBOLAID061 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward F3 20 GACGGGAGTGAGTGTCTACC 6387-6406 GP GACGGGAGUGAGUGUCUACC 23
EBOLAID062 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse B3 20 AGCTTGGGGCAGTATCAGAA 6586-6605 GP UUCUGAUACUGCCCCAAGCU 23
EBOLAID063 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse FL 15 GCACATACCGGCACC 6439-6453 GP GGUGCCGGUAUGUGC 23
EBOLAID064 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward BL 24 CTTCCTGTATGATCGACTTGCTTC 6515-6538 GP CUUCCUGUAUGAUCGACUUGCUUC 23
EBOLAID065 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward F3 23 CAATAAACAACTATTTAAATAAC 18321-18343 3'UTR CAAUAAACAACUAUUUAAAUAAC 24
EBOLAID066 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse B3 22 CTGGCAAGATATTGATACAACA 18530-18551 3'UTR UGUUGUAUCAAUAUCCUGUCAG 24
EBOLAID067 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse LF 19 AATTTTTTGATTATCACGC 18388-18406 3'UTR GCGUGAUAAUCAAAAAAUU 24
EBOLAID068 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward F3 21 TGAAGTCAAGAAGCGTGATGG 787-807 NP UGAAGUCAAGAAGCGUGAUGG 24
EBOLAID069 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse B3 21 AGTCCTTGCTCTGCATGTACT 1000-1020 NP AGUACAUGCAGAGCAAGGACU 24
EBOLAID070 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse LF 25 TGTTTTTTCCACTAGATACTGCTGG 833-857 NP CCAGCAGUAUCUAGUGGAAAAAACA 24
EBOLAID071 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward LB 23 TCCTTCCGAAATTGGTAGTAGGA 939-961 NP UCCUUCCGAAAUUGGUAGUAGGA 24
EBOLAID072 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward EBOV-F3 20 TGGTTCAAGTGCACAGTCAA 7086-7105 GP UGGUUCAAGUGCACAGUCAA 25
EBOLAID073 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse EBOV-B3 20 TGTCTGCTCTACGGTGATGT 7255-7274 GP ACAUCACCGCAGAACAGACA 25
EBOLAID074 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer reverse EBOV-LF 19 GCAAGGGTTGTCAGATGCG 7125-7143 GP CGCAUCUAACAACCCUUGC 25
EBOLAID075 Loop-Mediated Isothermal Amplification Primers Reverse transcription-loop-mediated isothermal ampli?cation Primer forward EBOV-LB 26 ATAATACACCCGTGTATAAACTTGAC 7203-7228 GP AUAAUACACCCGUGUAUAAACUUGAC 25
EBOLAID076 PCR primer pair Reverse transcription PCR PCR primer forward ZEBOV Forward 23 399 CGAACTTGACCATCTTGGACTTG 1552-1574 NP CGAACUUGACCAUCUUGGACUUG 26
EBOLAID077 PCR primer pair Reverse transcription PCR PCR primer reverse ZEBOV Reverse 22 399 TCCTCGTCGTCCTCGTCTAGAT 1929-1950 NP AUCUAGACGAGGACGACGAGGA 26
EBOLAID078 Primer forward Recombinase polymerase amplification (EBOV-RPA) Primer forward EBO-RPA-F 30 TAGTAGGAGAAAAGGCTTGCCTTGAGAAGG 954-983 NP UAGUAGGAGAAAAGGCUUGCCUUGAGAAGG 27
EBOLAID079 Primer reverse Recombinase polymerase amplification (EBOV-RPA) Primer reverse EBO-RPA-R 31 TGTTCGCATCAAACGGAAAATCACCATCATG 1057-1087 NP CAUGAUGGUGAUUUUCCGUUUGAUGCGAACA 27
EBOLAID080 Probe Recombinase polymerase amplification (EBOV-RPA) Probe EBO-RPA-P 32 TCAAGTACATGCAGAGCAAGGACTGATACAAT 997-1028 NP UCAAGUACAUGCAGAGCAAGGACUGAUACAAU 27