Select the most conserved/variable regions across the Ebola genomeΒΆ


The scatter plots describe a sliding window analysis (30 nt windows with 1 nt of overlap; regions with multiple gaps not considered) of the following measures of sequence conservation for each multiple sequence alignment used the database:
-PIS: percentage of identical sites
-PPI: percentage of pairwise identity

Select the alignment to display in the graph below:



Alignment info

Define below a window to see on the multiple sequence alignment:


Start position: End Position:

or use a window midpoint (roll over a dot on the graph) to visualize the corresponding section of the alignment


Midpoint:

Click and drag on the graphs to zoom in

List of the most conserved genomic regions considering the PIS (30 nt windows):





Genome Position PIS
1578-1607 60.00
1579-1608 60.00
1580-1609 60.00
1566-1595 56.67
1567-1596 56.67
1568-1597 56.67
1569-1598 56.67
1570-1599 56.67
1571-1600 56.67
1572-1601 56.67

List of the most conserved genomic regions considering the PPI (30 nt windows):





Genome Position PPI
2852-2881 99.78
2700-2729 99.62
4971-5000 99.52
2853-2882 99.51
3589-3618 97.76
3590-3619 96.26
4972-5001 94.55
9251-9280 93.90
4918-4947 93.58
2849-2878 90.60