EBOLAID001
Raw data
Min-max
|
PCR primer forward |
EBO-1 |
TGGGTAATYATCCTYTTCCA |
6102-6121 | GP |
UGGGUAAUUAUCCUUUUCCA |
6297-6316 | 70 |
80 |
94.63 |
1 |
EBOLAID002
Raw data
Min-max
|
PCR primer reverse |
EBO-2 |
ACGACACCTTCAGCRAAAGT |
6561-6580 | GP |
ACUUUCGCUGAAGGUGUCGU |
6756-6775 | 55 |
60 |
92.64 |
1 |
EBOLAID003
Raw data
Min-max
|
PCR primer forward |
EBO-3 |
GTTTGTCGKGACAAACTGTC |
6192-6211 | GP |
GUUUGUCGUGACAAACUGUC |
6387-6406 | 50 |
60 |
89.82 |
1 |
EBOLAID004
Raw data
Min-max
|
PCR primer reverse |
EBO-4 |
TGGAARGCWAAGTCWCCGG |
6481-6499 | GP |
CCGGAGACUUUGCCUUCCA |
6676-6694 | 47.37 |
40 |
91.81 |
1 |
EBOLAID005
Raw data
Min-max
|
PCR primer forward |
GAB-1 |
GAATGTAGGTAGAACCTTCGG |
13251-13271 | L |
GAAUGUAGGUAGAACCUUCGG |
13775-13795 | 52.38 |
80 |
90.41 |
1 |
EBOLAID006
Raw data
Min-max
|
PCR primer reverse |
GAB-2 |
GCATATAACACTGTGGGATTG |
13583-13603 | L |
CAAUCCCACAGUGUUAUAUGC |
14107-14127 | 66.67 |
40 |
93.69 |
1 |
EBOLAID007
Raw data
Min-max
|
PCR primer forward |
EBO-BP1 |
AATGGGCTGAAAATTGCTACAATC |
6346-6369 | GP |
AAUGGGCUGAAAACUGCUACAAUC |
6541-6564 | 70.83 |
60 |
97.65 |
2 |
EBOLAID008
Raw data
Min-max
|
PCR primer reverse |
EBO-GP2 |
TTTTTTTAGTTTCCCAGAAGGCCCACT |
6898-6924 | GP |
AGUGGGCCUUCUGGGAAACUAAAAAAA |
7093-7119 | 81.48 |
80 |
97.1 |
2 |
EBOLAID009
Raw data
Min-max
|
PCR primer forward |
ZAI-NP1 |
GGACCGCCAAGGTAAAAAATGA |
1275-1296 | NP |
GGACCGCCAAGGUAAAAAAUGA |
1307-1328 | 59.09 |
80 |
91.83 |
2 |
EBOLAID010
Raw data
Min-max
|
PCR primer reverse |
ZAI-NP2 |
GCATATTGTTGGAGTTGCTTCTCAGC |
1517-1542 | NP |
GCUGAGAAGCAACUCCAACAAUAUGC |
1549-1574 | 65.38 |
80 |
96.51 |
2 |
EBOLAID011
Raw data
Min-max
|
PCR primer forward |
|
ATCGGAATTTTCTTTCTCATTGAAAGA |
13214-13241 | L |
AUCGGAACUUUUCUUUCUCAUUGAAAGA |
13738-13765 | 60.71 |
80 |
94.46 |
3;4 |
EBOLAID012
Raw data
Min-max
|
PCR primer reverse |
|
ATGTGGTGGATTATAATAATCACTGACATG(...) |
13600-13632 | L |
AUGCAUGUCAGUGAUUAUUAUAAUCCACCA(...) |
14124-14156 | 81.82 |
80 |
96.04 |
3;4 |
EBOLAID013
Raw data
Min-max
|
PCR primer forward |
EBOGP-1Df |
TGGGCTGAAAAYTGCTACAATC |
6348-6369 | GP |
UGGGCUGAAAACUGCUACAAUC |
6543-6564 | 72.73 |
60 |
97.79 |
5 |
EBOLAID014
Raw data
Min-max
|
PCR primer reverse |
EBOGP-1Dr |
CTTTGTGMACATASCGGCAC |
6440-6459 | GP |
GUGCCGGUAUGUGCACAAAG |
6635-6654 | 75 |
60 |
95.47 |
5 |
EBOLAID015
Raw data
Min-max
|
Probe |
EBOGP-1DZPrb |
CTACCAGCAGCGCCAGACGG |
6402-6421 | GP |
CUACCAGCAGCGCCAGACGG |
6597-6616 | 50 |
80 |
90.01 |
5 |
EBOLAID016
Raw data
Min-max
|
PCR primer forward |
FILO-A |
ATCGGAATTTTTCTTTCTCATT |
13214-13235 | L |
AUCGGAACUUUUCUUUCUCAUU |
13738-13759 | 59.09 |
60 |
94.69 |
2;1;5;6 |
EBOLAID017
Raw data
Min-max
|
PCR primer reverse |
FILO-B |
ATGTGGTGGGTTATAATAATCACTGACATG |
13603-13632 | L |
CAUGUCAGUGAUUAUUAUAAUCCACCACAU |
14127-14156 | 83.33 |
100 |
95.95 |
2;1;5;6;7 |
EBOLAID018
Raw data
Min-max
|
PCR primer forward |
EBOORF UP |
ATGGATTCTCGTCCTCAGAAAAT |
470-492 | NP |
AUGGAUUCUCGUCCUCAGAAAAU |
502-524 | 26.09 |
0 |
82.94 |
8 |
EBOLAID019
Raw data
Min-max
|
PCR primer reverse |
EBOORF DP |
TCACTGATGATGTTGCAGGATT |
2668-2689 | NP |
AAUCCUGCAACAUCAUCAGUGA |
2710-2731 | 36.36 |
20 |
89.51 |
8 |
EBOLAID020
Raw data
Min-max
|
PCR primer forward |
ENZ FP |
ATGATGGAAGCTACGGCG |
1854-1871 | NP |
AUGAUGGAAGCUACGGCG |
1886-1903 | 27.78 |
0 |
81.63 |
8 |
EBOLAID021
Raw data
Min-max
|
PCR primer reverse |
ENZ RP |
AGGACCAAGTCATCTGGTGC |
1904-1923 | NP |
GCACCAGAUGACUUGGUCCU |
1936-1955 | 35 |
40 |
88.14 |
8 |
EBOLAID022
Raw data
Min-max
|
Probe |
ENZ P |
CCAGAGTTACTCGGAAAACGGCATG |
1876-1900 | NP |
CCAGAGUUACUCGGAAAACGGCAUG |
1908-1932 | 8 |
0 |
77.41 |
8 |
EBOLAID023
Raw data
Min-max
|
PCR primer forward |
SudZaiNP1(+) |
GAGACAACGGAAGCTAATGC |
890-909 | NP |
GAGACAACUGAAGCUAAUGC |
922-941 | 80 |
100 |
94.87 |
9 |
EBOLAID024
Raw data
Min-max
|
PCR primer reverse |
SudZaiNP1(-) |
AACGGAAGATCACCATCATG |
1057-1076 | NP |
CAUGAUGGUGAUUUUCCGUU |
1089-1108 | 65 |
80 |
94.58 |
9 |
EBOLAID025
Raw data
Min-max
|
PCR primer forward |
SudZaiNP2(+) |
GGTCAGTTTCTATCCTTTGC |
911-930 | NP |
GGUCAGUUUCUCUCCUUUGC |
943-962 | 70 |
100 |
92.64 |
9 |
EBOLAID026
Raw data
Min-max
|
PCR primer reverse |
SudZaiNP2(-) |
CATGTGTCCAACTGATTGCC |
1041-1060 | NP |
GGCAAUCAGUAGGACACAUG |
1073-1092 | 80 |
80 |
97.56 |
9 |
EBOLAID027
Raw data
Min-max
|
PCR primer forward |
EBsp5 |
TTYCCTAGCAAYATGATGG |
13345-13363 | L |
UUUCCUAGCAAUAUGAUGG |
13869-13887 | 78.95 |
100 |
95.93 |
10;4 |
EBOLAID028
Raw data
Min-max
|
PCR primer reverse |
EBsp3 |
TATAATAATCACTGACATGCAT |
13600-13621 | L |
AUGCAUGUCAGUGAUUAUUAUA |
14124-14145 | 90.91 |
80 |
98.11 |
10;4 |
EBOLAID029
Raw data
Min-max
|
PCR primer forward |
evR3 |
TCTTGCAAGGACCGCCAAGGTAAAAA |
1267-1292 | NP |
UCUUGCAAGGACCGCCAAGGUAAAAA |
1299-1324 | 50 |
20 |
88.54 |
11 |
EBOLAID030
Raw data
Min-max
|
PCR primer reverse |
evF3 |
TTCAAAAGTCGGGCGAAAGGAGCATA |
1346-1371 | NP |
UAUGCUCCUUUCGCCCGACUUUUGAA |
1378-1403 | 65.38 |
100 |
91.92 |
11 |
EBOLAID031
Raw data
Min-max
|
PCR primer forward |
F3 |
AATAACGAAAGGAGTCCCTA |
18338-18357 | 3'UTR |
AAUAACGAAAGGAGUCCCUA |
18913-18932 | 0 |
0 |
73.31 |
12 |
EBOLAID032
Raw data
Min-max
|
PCR primer reverse |
B3 |
TTGTATCAATATCCTGTCAG |
18532-18551 | 3'UTR |
UUGUAUCAAUAUCCUGUCAG |
19115-19129 | 0 |
0 |
76.44 |
12 |
EBOLAID033
Raw data
Min-max
|
PCR primer forward |
Ebola-1F |
GATGCAGTATTCGAGCCTAATGTTCTAG |
13063-13090 | L |
GAUGCAGUAUUCGAGCCUAAUGUUCUAG |
13587-13614 | 67.86 |
40 |
94.04 |
13 |
EBOLAID034
Raw data
Min-max
|
PCR primer reverse |
Ebola-1R |
GTGTTTGAACATTGCGAGTCGGATAAG |
13280-13306 | L |
CUUAUCCGACUCGCAAUGUUCAAACAC |
13804-13830 | 62.96 |
80 |
91.44 |
13 |
EBOLAID035
Raw data
Min-max
|
Probe |
Ebola-P |
ACTCGAGTATCTACTACCACAATATCGGAA(...) |
13191-13221 | L |
ACUCGAGUAUCUACUACCACAAUAUCGGAA(...) |
13715-13745 | 38.71 |
60 |
89.67 |
13 |
EBOLAID036
Raw data
Min-max
|
PCR primer forward |
FiloA2.4 |
AAGCATTTCCTAGCAATATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
13864-13888 | 76 |
100 |
95.3 |
7 |
EBOLAID037
Raw data
Min-max
|
PCR primer forward |
FiloA2.2 |
AAGCCTTTCCTAGCAACATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
13864-13888 | 76 |
100 |
95.3 |
7 |
EBOLAID038
Raw data
Min-max
|
PCR primer forward |
FiloA2.3 |
AAGCATTCCCTAGCAACATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
13864-13888 | 76 |
100 |
95.3 |
7 |
EBOLAID039
Raw data
Min-max
|
PCR primer reverse |
FILO B-Ra |
GTGAGGAGGGCTATAAAAGTCACTGACATG |
13603-13632 | L |
CAUGUCAGUGAUUAUUAUAAUCCACCACAU |
14127-14145 | 94.74 |
100 |
98.3 |
7 |
EBOLAID040
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
FAMEBOSu |
CCGAAATCATCACTIGTITGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
13935-13957 | 78.26 |
100 |
97.68 |
7 |
EBOLAID041
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
FAMEBOg |
CCAAAATCATCACTIGTGTGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
13935-13960 | 76.92 |
80 |
96.59 |
7 |
EBOLAID042
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
FAMMBG |
CCTATGCTTGCTGAATTGTGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
13935-13944 | 70 |
40 |
97.11 |
7 |
EBOLAID043
Raw data
Min-max
|
PCR primer forward |
F565 |
TCTGACATGGATTACCACAAGATC |
518-541 | NP |
UCUGACAUGGAUUACCACAAGAUC |
550-573 | 50 |
60 |
89.03 |
14 |
EBOLAID044
Raw data
Min-max
|
PCR primer reverse |
R640 |
GGATGACTCTTTGCCGAACAATC |
571-593 | NP |
GAUUGUUCGGCAAAGAGUCAUCC |
603-625 | 43.48 |
60 |
92.04 |
14 |
EBOLAID045
Raw data
Min-max
|
Probe (FAM&MGB) |
p597S |
AGGTCTGTCCGTTCAA |
550-565 | NP |
AGGUCUGUCCGUUCAA |
582-597 | 50 |
60 |
89.71 |
14 |
EBOLAID046
Raw data
Min-max
|
PCR primer forward |
F2000 |
TTTTCAATCCTCAACCGTAAGGC |
7781-7803 | GP |
UUUUCAAUCCUCAACCGUAAGGC |
8013-8035 | 47.83 |
80 |
89.31 |
14 |
EBOLAID047
Raw data
Min-max
|
PCR primer reverse |
R2079 |
CAGTCCGGTCCCAGAATGTG |
7841-7860 | GP |
CACAUUCUGGGACCGGACUG |
8073-8092 | 45 |
40 |
87.92 |
14 |
EBOLAID048
Raw data
Min-max
|
Probe (FAM&TAMRA) |
p2058A |
CATGTGCCGCCCCATCGCTGC |
7819-7839 | GP |
GCAGCGAUGGGGCGGCACAUG |
8051-8071 | 66.67 |
80 |
91.64 |
14 |
EBOLAID049
Raw data
Min-max
|
PCR primer forward |
PanFilo-L1 |
ATMGRAAYTTTTCYTTYTCWYT |
13214-13235 | L |
AUCGGAACUUUUCUUUCUCAUU |
13738-13756 | 63.16 |
80 |
95.41 |
15 |
EBOLAID050
Raw data
Min-max
|
PCR primer reverse |
Pan?lo-L2 |
TGWGGHGGRYTATAAWARTCACTDACAT |
13604-13631 | L |
AUGUCAGUGAUUAUUAUAAUCCACCACA |
14128-14155 | 85.71 |
80 |
96.04 |
15 |
EBOLAID051
Raw data
Min-max
|
PCR primer forward |
PanFilo-L3 |
GCNAARGCMTTYCCHAGYAAYATGATGG |
13336-13363 | L |
GCUAAAGCAUUUCCUAGCAAUAUGAUGG |
13863-13887 | 76 |
100 |
95.3 |
15 |
EBOLAID052
Raw data
Min-max
|
PCR primer reverse |
Pan?lo-L4 |
ATAAWARTCACTDACATGCATRTARCA |
13594-13620 | L |
UGUUAUAUGCAUGUCAGUGAUUAUUAU |
14118-14144 | 88.89 |
100 |
97.58 |
15 |
EBOLAID053
Raw data
Min-max
|
PCR primer forward |
KGH-F |
GTCGTTCCAACAATCGAGCG |
10243-10262 | VP24 |
GUCGUUCCAACAAUCGAGCG |
10684-10703 | 0 |
0 |
76.56 |
16 |
EBOLAID054
Raw data
Min-max
|
PCR primer forward |
KGH-R |
CGTCCCGTAGCTTTRGCCAT |
10345-10364 | VP24 |
AUGGCUAAAGCUACGGGACG |
10789-10808 | 70 |
60 |
92.16 |
16 |
EBOLAID055
Raw data
Min-max
|
PCR primer forward |
ZEBOV-F |
TGGAAAAAACATTAAGAGAACACTTGC |
847-873 | NP |
UGGAAAAAACAUUAAGAGAACACUUGC |
879-905 | 51.85 |
60 |
89.95 |
17 |
EBOLAID056
Raw data
Min-max
|
PCR primer reverse |
ZEBOV-R |
AGGAGAGAAACTGACCGGCAT |
906-926 | NP |
AUGCCGGUCAGUUUCUCUCCU |
938-958 | 66.67 |
80 |
91.53 |
17 |
EBOLAID057
Raw data
Min-max
|
Probe (FAM & BlackHole Quenche(...) |
ZEBOV-P |
CATGCCGGAAGAGGAGACAACTGAAGC |
877-903 | NP |
CAUGCCGGAAGAGGAGACAACUGAAGC |
909-935 | 74.07 |
100 |
93.97 |
17 |
EBOLAID058
Raw data
Min-max
|
PCR primer forward |
rt_EBOV-f |
ATTTGAATGGGGTCCAATTGCC |
13997-14018 | L |
AUUUGAAUGGGGUCCAAUUGCC |
14521-14542 | 63.64 |
80 |
92.55 |
22 |
EBOLAID059
Raw data
Min-max
|
PCR primer reverse |
rt_EBOL-r |
AAGCAGTRCCTATACTAGCCA |
14090-14110 | L |
UGGCUAGUAUAGGCACUGCUU |
14614-14634 | 66.67 |
60 |
92.31 |
22 |
EBOLAID060
Raw data
Min-max
|
Probe (Taqman) |
EBOV_prb |
AGTCCCTTAAAACGGCTACAAGAATGGGAC |
14021-14050 | L |
AGUCCCUUAAAACGGCUACAAGAAUGGCAC |
14545-14571 | 62.96 |
60 |
90.86 |
22 |
EBOLAID061
Raw data
Min-max
|
Primer forward |
F3 |
GACGGGAGTGAGTGTCTACC |
6387-6406 | GP |
GACGGGAGUGAGUGUCUACC |
6582-6601 | 65 |
60 |
93.37 |
23 |
EBOLAID062
Raw data
Min-max
|
Primer reverse |
B3 |
AGCTTGGGGCAGTATCAGAA |
6586-6605 | GP |
UUCUGAUACUGCCCCAAGCU |
6781-6800 | 40 |
40 |
86.88 |
23 |
EBOLAID063
Raw data
Min-max
|
Primer reverse |
FL |
GCACATACCGGCACC |
6439-6453 | GP |
GGUGCCGGUAUGUGC |
6634-6648 | 73.33 |
60 |
94.48 |
23 |
EBOLAID064
Raw data
Min-max
|
Primer forward |
BL |
CTTCCTGTATGATCGACTTGCTTC |
6515-6538 | GP |
CUUCCUGUAUGAUCGACUUGCUUC |
6710-6733 | 58.33 |
80 |
93.17 |
23 |
EBOLAID065
Raw data
Min-max
|
Primer forward |
F3 |
CAATAAACAACTATTTAAATAAC |
18321-18343 | 3'UTR |
CAAUAAACAACUAUUUAAAUAAC |
18896-18918 | 0 |
0 |
77.38 |
24 |
EBOLAID066
Raw data
Min-max
|
Primer reverse |
B3 |
CTGGCAAGATATTGATACAACA |
18530-18551 | 3'UTR |
UGUUGUAUCAAUAUCCUGUCAG |
7074-7085 | 25 |
40 |
83.44 |
24 |
EBOLAID067
Raw data
Min-max
|
Primer reverse |
LF |
AATTTTTTGATTATCACGC |
18388-18406 | 3'UTR |
GCGUGAUAAUCAAAAAAUU |
18963-18981 | 5.26 |
20 |
81.11 |
24 |
EBOLAID068
Raw data
Min-max
|
Primer forward |
F3 |
TGAAGTCAAGAAGCGTGATGG |
787-807 | NP |
UGAAGUCAAGAAGCGUGAUGG |
819-839 | 33.33 |
40 |
83.89 |
24 |
EBOLAID069
Raw data
Min-max
|
Primer reverse |
B3 |
AGTCCTTGCTCTGCATGTACT |
1000-1020 | NP |
AGUACAUGCAGAGCAAGGACU |
1032-1052 | 57.14 |
60 |
92.81 |
24 |
EBOLAID070
Raw data
Min-max
|
Primer reverse |
LF |
TGTTTTTTCCACTAGATACTGCTGG |
833-857 | NP |
CCAGCAGUAUCUAGUGGAAAAAACA |
865-889 | 40 |
40 |
86.52 |
24 |
EBOLAID071
Raw data
Min-max
|
Primer forward |
LB |
TCCTTCCGAAATTGGTAGTAGGA |
939-961 | NP |
UCCUUCCGAAAUUGGUAGUAGGA |
971-993 | 60.87 |
60 |
90.99 |
24 |
EBOLAID072
Raw data
Min-max
|
Primer forward |
EBOV-F3 |
TGGTTCAAGTGCACAGTCAA |
7086-7105 | GP |
UGGUUCAAGUGCACAGUCAA |
7281-7300 | 40 |
0 |
89.64 |
25 |
EBOLAID073
Raw data
Min-max
|
Primer reverse |
EBOV-B3 |
TGTCTGCTCTACGGTGATGT |
7255-7274 | GP |
ACAUCACCGCAGAACAGACA |
7450-7469 | 10 |
20 |
81.73 |
25 |
EBOLAID074
Raw data
Min-max
|
Primer reverse |
EBOV-LF |
GCAAGGGTTGTCAGATGCG |
7125-7143 | GP |
CGCAUCUAACAACCCUUGC |
7320-7338 | 10.53 |
20 |
83.66 |
25 |
EBOLAID075
Raw data
Min-max
|
Primer forward |
EBOV-LB |
ATAATACACCCGTGTATAAACTTGAC |
7203-7228 | GP |
AUAAUACACCCGUGUAUAAACUUGAC |
7398-7423 | 7.69 |
0 |
85.14 |
25 |
EBOLAID076
Raw data
Min-max
|
PCR primer forward |
ZEBOV Forward |
CGAACTTGACCATCTTGGACTTG |
1552-1574 | NP |
CGAACUUGACCAUCUUGGACUUG |
1584-1606 | 52.17 |
60 |
89.85 |
26 |
EBOLAID077
Raw data
Min-max
|
PCR primer reverse |
ZEBOV Reverse |
TCCTCGTCGTCCTCGTCTAGAT |
1929-1950 | NP |
AUCUAGACGAGGACGACGAGGA |
1961-1982 | 50 |
40 |
90.56 |
26 |
EBOLAID078
Raw data
Min-max
|
Primer forward |
EBO-RPA-F |
TAGTAGGAGAAAAGGCTTGCCTTGAGAAGG(...) |
954-983 | NP |
UAGUAGGAGAAAAGGCUUGCCUUGAGAAGG |
986-1015 | 63.33 |
60 |
91.45 |
27 |
EBOLAID079
Raw data
Min-max
|
Primer reverse |
EBO-RPA-R |
TGTTCGCATCAAACGGAAAATCACCATCAT(...) |
1057-1087 | NP |
CAUGAUGGUGAUUUUCCGUUUGAUGCGAAC(...) |
1089-1119 | 64.52 |
80 |
94.38 |
27 |
EBOLAID080
Raw data
Min-max
|
Probe |
EBO-RPA-P |
TCAAGTACATGCAGAGCAAGGACTGATACA(...) |
997-1028 | NP |
UCAAGUACAUGCAGAGCAAGGACUGAUACA(...) |
1029-1060 | 62.5 |
80 |
93.23 |
27 |