EbolaID DATABASE PROJECT
EbolaID provides a complete, quality checked and regularly updated list of oligonucleotides for the Ebola virus. The database describes the genetic diversity across the Ebola genome to facilitate the design of accurate diagnostic methods and therapeutic approaches.
What can be done in EbolaID
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Ebola>> Find a brief description of the Ebola virus
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Database content
| Total number of oligonucleotides: 80 | Number of PCR primers: 69 | Number of probes: 11 | Number of publications: 27 |
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Localization of oligonucleotides (green arrows) in the Ebola virus reference genome
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What can be found in EbolaID
Search for the best oligonucleotides according
to the degree of conservation
in specific sequence alignments
to the degree of conservation
in specific sequence alignments
Select the most conserved/variable regions
across the Ebola genome
across the Ebola genome
Find PCR primer pairs ordered by the average
degree of conservation
in diverse sequence alignments
degree of conservation
in diverse sequence alignments
Search for oligonucleotides described
in peer reviewed publications ordered
by the average degree of conservation
in diverse sequence alignments
in peer reviewed publications ordered
by the average degree of conservation
in diverse sequence alignments
Find information on the sequence conservation
measures used in this site
measures used in this site
Conserved
genomic regions
genomic regions
Select the best alignment according to
different measure of sequence conservation
different measure of sequence conservation
PCR primer pairs
The best oligonucleotides
Our sequence
conservation measures
conservation measures
The top alignments
Oligonucleotides
in specific alignments
in specific alignments
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The best oligonucleotides
| Top oligonucleotides | ||
| Oligonucleotide | EbolaID score | |
| EBOLAID051 | 87.51 | |
| EBOLAID039 | 87.24 | |
| EBOLAID027 | 86.75 | |
| EBOLAID036 | 86.10 | |
| EBOLAID037 | 86.10 | |
| Top PCR primer pairs | ||
| Primer 1 | Primer 2 | EbolaID score |
| EBOLAID039 | EBOLAID051 | 87.54 |
| EBOLAID028 | EBOLAID051 | 87.53 |
| EBOLAID028 | EBOLAID036 | 86.83 |
| EBOLAID028 | EBOLAID037 | 86.83 |
| EBOLAID028 | EBOLAID038 | 86.83 |
News
1/3/2017 - Database updated with 23 new oligonucleotides from 10 peer-reviewed publications.
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Contacts
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Filipe Pereira -
fpereirapt@gmail.com João Carneiro - joaomiguelsov@gmail.com |
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Reference
"EbolaID: An Online Database of Informative Genomic Regions for Ebola Identification and Treatment"
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