EBOLAID001 |
PCR primer pair |
Reverse transcriptase PCR and nested PCR |
PCR primer forward |
EBO-1 |
20 |
479 |
TGGGTAATYATCCTYTTCCA |
6102-6121 | GP |
UGGGUAAUUAUCCUUUUCCA |
1 |
EBOLAID002 |
PCR primer pair |
Reverse transcriptase PCR and nested PCR |
PCR primer reverse |
EBO-2 |
20 |
479 |
ACGACACCTTCAGCRAAAGT |
6561-6580 | GP |
ACUUUCGCUGAAGGUGUCGU |
1 |
EBOLAID003 |
PCR primer pair |
Reverse transcription PCR and nested PCR |
PCR primer forward |
EBO-3 |
20 |
308 |
GTTTGTCGKGACAAACTGTC |
6192-6211 | GP |
GUUUGUCGUGACAAACUGUC |
1 |
EBOLAID004 |
PCR primer pair |
Reverse transcription PCR and nested PCR |
PCR primer reverse |
EBO-4 |
19 |
308 |
TGGAARGCWAAGTCWCCGG |
6481-6499 | GP |
CCGGAGACUUUGCCUUCCA |
1 |
EBOLAID005 |
PCR primer pair |
Reverse transcription PCR and nested PCR |
PCR primer forward |
GAB-1 |
21 |
353 |
GAATGTAGGTAGAACCTTCGG |
13251-13271 | L |
GAAUGUAGGUAGAACCUUCGG |
1 |
EBOLAID006 |
PCR primer pair |
Reverse transcription PCR and nested PCR |
PCR primer reverse |
GAB-2 |
21 |
353 |
GCATATAACACTGTGGGATTG |
13583-13603 | L |
CAAUCCCACAGUGUUAUAUGC |
1 |
EBOLAID007 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
EBO-BP1 |
24 |
579 |
AATGGGCTGAAAATTGCTACAATC |
6346-6369 | GP |
AAUGGGCUGAAAACUGCUACAAUC |
2 |
EBOLAID008 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
EBO-GP2 |
27 |
579 |
TTTTTTTAGTTTCCCAGAAGGCCCACT |
6898-6924 | GP |
AGUGGGCCUUCUGGGAAACUAAAAAAA |
2 |
EBOLAID009 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
ZAI-NP1 |
22 |
268 |
GGACCGCCAAGGTAAAAAATGA |
1275-1296 | NP |
GGACCGCCAAGGUAAAAAAUGA |
2 |
EBOLAID010 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
ZAI-NP2 |
26 |
268 |
GCATATTGTTGGAGTTGCTTCTCAGC |
1517-1542 | NP |
GCUGAGAAGCAACUCCAACAAUAUGC |
2 |
EBOLAID011 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
|
27 |
419 |
ATCGGAATTTTCTTTCTCATTGAAAGA |
13214-13241 | L |
AUCGGAACUUUUCUUUCUCAUUGAAAGA |
3; 4; |
EBOLAID012 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
|
33 |
419 |
ATGTGGTGGATTATAATAATCACTGACATGCAT |
13600-13632 | L |
AUGCAUGUCAGUGAUUAUUAUAAUCCACCACAU |
3; 4; |
EBOLAID013 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
EBOGP-1Df |
22 |
112 |
TGGGCTGAAAAYTGCTACAATC |
6348-6369 | GP |
UGGGCUGAAAACUGCUACAAUC |
5 |
EBOLAID014 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
EBOGP-1Dr |
20 |
112 |
CTTTGTGMACATASCGGCAC |
6440-6459 | GP |
GUGCCGGUAUGUGCACAAAG |
5 |
EBOLAID015 |
Probe |
Reverse transcription PCR |
Probe |
EBOGP-1DZPrb |
20 |
|
CTACCAGCAGCGCCAGACGG |
6402-6421 | GP |
CUACCAGCAGCGCCAGACGG |
5 |
EBOLAID016 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
FILO-A |
22 |
419 |
ATCGGAATTTTTCTTTCTCATT |
13214-13235 | L |
AUCGGAACUUUUCUUUCUCAUU |
2; 1; 5; 6; |
EBOLAID017 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
FILO-B |
30 |
419 |
ATGTGGTGGGTTATAATAATCACTGACATG |
13603-13632 | L |
CAUGUCAGUGAUUAUUAUAAUCCACCACAU |
2; 1; 5; 6; 7; |
EBOLAID018 |
PCR primer pair |
PCR |
PCR primer forward |
EBOORF UP |
23 |
2220 |
ATGGATTCTCGTCCTCAGAAAAT |
470-492 | NP |
AUGGAUUCUCGUCCUCAGAAAAU |
8 |
EBOLAID019 |
PCR primer pair |
PCR |
PCR primer reverse |
EBOORF DP |
22 |
2220 |
TCACTGATGATGTTGCAGGATT |
2668-2689 | NP |
AAUCCUGCAACAUCAUCAGUGA |
8 |
EBOLAID020 |
PCR primer pair |
Real-time PCR |
PCR primer forward |
ENZ FP |
18 |
70 |
ATGATGGAAGCTACGGCG |
1854-1871 | NP |
AUGAUGGAAGCUACGGCG |
8 |
EBOLAID021 |
PCR primer pair |
Real-time PCR |
PCR primer reverse |
ENZ RP |
20 |
70 |
AGGACCAAGTCATCTGGTGC |
1904-1923 | NP |
GCACCAGAUGACUUGGUCCU |
8 |
EBOLAID022 |
Probe |
Real-time PCR |
Probe |
ENZ P |
25 |
|
CCAGAGTTACTCGGAAAACGGCATG |
1876-1900 | NP |
CCAGAGUUACUCGGAAAACGGCAUG |
8 |
EBOLAID023 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
SudZaiNP1(+) |
20 |
187 |
GAGACAACGGAAGCTAATGC |
890-909 | NP |
GAGACAACUGAAGCUAAUGC |
9 |
EBOLAID024 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
SudZaiNP1(-) |
20 |
187 |
AACGGAAGATCACCATCATG |
1057-1076 | NP |
CAUGAUGGUGAUUUUCCGUU |
9 |
EBOLAID025 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
SudZaiNP2(+) |
20 |
150 |
GGTCAGTTTCTATCCTTTGC |
911-930 | NP |
GGUCAGUUUCUCUCCUUUGC |
9; 18; |
EBOLAID026 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
SudZaiNP2(-) |
20 |
150 |
CATGTGTCCAACTGATTGCC |
1041-1060 | NP |
GGCAAUCAGUAGGACACAUG |
9; 18; |
EBOLAID027 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer forward |
EBsp5 |
19 |
277 |
TTYCCTAGCAAYATGATGG |
13345-13363 | L |
UUUCCUAGCAAUAUGAUGG |
4; 10; |
EBOLAID028 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer reverse |
EBsp3 |
22 |
277 |
TATAATAATCACTGACATGCAT |
13600-13621 | L |
AUGCAUGUCAGUGAUUAUUAUA |
4; 10; |
EBOLAID029 |
RT-tHDA primer pair |
Isothermal reverse transcription-thermophilic helicase-dependent amplification (RT-tHDA) |
Primer forward |
evR3 |
26 |
105 |
TCTTGCAAGGACCGCCAAGGTAAAAA |
1267-1292 | NP |
UCUUGCAAGGACCGCCAAGGUAAAAA |
11 |
EBOLAID030 |
RT-tHDA primer pair |
Isothermal reverse transcription-thermophilic helicase-dependent amplification (RT-tHDA) |
Primer reverse |
evF3 |
26 |
105 |
TTCAAAAGTCGGGCGAAAGGAGCATA |
1346-1371 | NP |
UAUGCUCCUUUCGCCCGACUUUUGAA |
11 |
EBOLAID031 |
RT-LAMP primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
F3 |
20 |
214 |
AATAACGAAAGGAGTCCCTA |
18338-18357 | 3'UTR |
AAUAACGAAAGGAGUCCCUA |
12 |
EBOLAID032 |
RT-LAMP primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
B3 |
20 |
214 |
TTGTATCAATATCCTGTCAG |
18532-18551 | 3'UTR |
UUGUAUCAAUAUCCUGUCAG |
12 |
EBOLAID033 |
PCR primer pair |
Reverse transcription PCR Enzyme Hybridization Assay |
PCR primer forward |
Ebola-1F |
28 |
244 |
GATGCAGTATTCGAGCCTAATGTTCTAG |
13063-13090 | L |
GAUGCAGUAUUCGAGCCUAAUGUUCUAG |
13 |
EBOLAID034 |
PCR primer pair |
Reverse transcription PCR Enzyme Hybridization Assay |
PCR primer reverse |
Ebola-1R |
27 |
244 |
GTGTTTGAACATTGCGAGTCGGATAAG |
13280-13306 | L |
CUUAUCCGACUCGCAAUGUUCAAACAC |
13 |
EBOLAID035 |
Probe |
Reverse transcription PCR Enzyme Hybridization Assay |
Probe |
Ebola-P |
31 |
|
ACTCGAGTATCTACTACCACAATATCGGAAC |
13191-13221 | L |
ACUCGAGUAUCUACUACCACAAUAUCGGAAC |
13 |
EBOLAID036 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
FiloA2.4 |
25 |
293 |
AAGCATTTCCTAGCAATATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
7 |
EBOLAID037 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
FiloA2.2 |
25 |
|
AAGCCTTTCCTAGCAACATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
7 |
EBOLAID038 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
FiloA2.3 |
25 |
|
AAGCATTCCCTAGCAACATGATGGT |
13340-13364 | L |
AAGCAUUUCCUAGCAAUAUGAUGGU |
7 |
EBOLAID039 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
FILO B-Ra |
30 |
|
GTGAGGAGGGCTATAAAAGTCACTGACATG |
13603-13632 | L |
CAUGUCAGUGAUUAUUAUAAUCCACCACAU |
7 |
EBOLAID040 |
Probe |
Reverse transcription PCR |
Probe (FAM & BlackHole Quencher 1) |
FAMEBOSu |
26 |
|
CCGAAATCATCACTIGTITGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
7 |
EBOLAID041 |
Probe |
Reverse transcription PCR |
Probe (FAM & BlackHole Quencher 1) |
FAMEBOg |
26 |
|
CCAAAATCATCACTIGTGTGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
7 |
EBOLAID042 |
Probe |
Reverse transcription PCR |
Probe (FAM & BlackHole Quencher 1) |
FAMMBG |
26 |
|
CCTATGCTTGCTGAATTGTGGTGCCA |
13411-13436 | L |
UGGCACCACACAAGUGAUGAUUUUGG |
7 |
EBOLAID043 |
PCR primer pair |
Real-time PCR |
PCR primer forward |
F565 |
24 |
76 |
TCTGACATGGATTACCACAAGATC |
518-541 | NP |
UCUGACAUGGAUUACCACAAGAUC |
14; 20; |
EBOLAID044 |
PCR primer pair |
Real-time PCR |
PCR primer reverse |
R640 |
23 |
76 |
GGATGACTCTTTGCCGAACAATC |
571-593 | NP |
GAUUGUUCGGCAAAGAGUCAUCC |
14; 20; |
EBOLAID045 |
Probe |
Real-time PCR |
Probe (FAM&MGB) |
p597S |
16 |
|
AGGTCTGTCCGTTCAA |
550-565 | NP |
AGGUCUGUCCGUUCAA |
14 |
EBOLAID046 |
PCR primer pair |
Real-time PCR |
PCR primer forward |
F2000 |
23 |
80 |
TTTTCAATCCTCAACCGTAAGGC |
7781-7803 | GP |
UUUUCAAUCCUCAACCGUAAGGC |
14 |
EBOLAID047 |
PCR primer pair |
Real-time PCR |
PCR primer reverse |
R2079 |
20 |
80 |
CAGTCCGGTCCCAGAATGTG |
7841-7860 | GP |
CACAUUCUGGGACCGGACUG |
14 |
EBOLAID048 |
Probe |
Real-time PCR |
Probe (FAM&TAMRA) |
p2058A |
21 |
|
CATGTGCCGCCCCATCGCTGC |
7819-7839 | GP |
GCAGCGAUGGGGCGGCACAUG |
14 |
EBOLAID049 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
PanFilo-L1 |
22 |
418 |
ATMGRAAYTTTTCYTTYTCWYT |
13214-13235 | L |
AUCGGAACUUUUCUUUCUCAUU |
15 |
EBOLAID050 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
Pan?lo-L2 |
28 |
418 |
TGWGGHGGRYTATAAWARTCACTDACAT |
13604-13631 | L |
AUGUCAGUGAUUAUUAUAAUCCACCACA |
15 |
EBOLAID051 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
PanFilo-L3 |
28 |
285 |
GCNAARGCMTTYCCHAGYAAYATGATGG |
13336-13363 | L |
GCUAAAGCAUUUCCUAGCAAUAUGAUGG |
15 |
EBOLAID052 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
Pan?lo-L4 |
27 |
285 |
ATAAWARTCACTDACATGCATRTARCA |
13594-13620 | L |
UGUUAUAUGCAUGUCAGUGAUUAUUAU |
15 |
EBOLAID053 |
PCR primer pair |
|
PCR primer forward |
KGH-F |
20 |
122 |
GTCGTTCCAACAATCGAGCG |
10243-10262 | VP24 |
GUCGUUCCAACAAUCGAGCG |
16 |
EBOLAID054 |
PCR primer pair |
|
PCR primer reverse |
KGH-R |
20 |
122 |
CGTCCCGTAGCTTTRGCCAT |
10345-10364 | VP24 |
AUGGCUAAAGCUACGGGACG |
16 |
EBOLAID055 |
PCR primer pair |
High-throughput RNA extraction/quantitative RT-PCR |
PCR primer forward |
ZEBOV-F |
27 |
80 |
TGGAAAAAACATTAAGAGAACACTTGC |
847-873 | NP |
UGGAAAAAACAUUAAGAGAACACUUGC |
17; 21; |
EBOLAID056 |
PCR primer pair |
High-throughput RNA extraction/quantitative RT-PCR |
PCR primer reverse |
ZEBOV-R |
21 |
80 |
AGGAGAGAAACTGACCGGCAT |
906-926 | NP |
AUGCCGGUCAGUUUCUCUCCU |
17; 21; |
EBOLAID057 |
Probe |
High-throughput RNA extraction/quantitative RT-PCR |
Probe (FAM & BlackHole Quencher) |
ZEBOV-P |
27 |
|
CATGCCGGAAGAGGAGACAACTGAAGC |
877-903 | NP |
CAUGCCGGAAGAGGAGACAACUGAAGC |
17; 21; |
EBOLAID058 |
PCR primer pair |
Real-time PCR |
PCR primer forward |
rt_EBOV-f |
22 |
|
ATTTGAATGGGGTCCAATTGCC |
13997-14018 | L |
AUUUGAAUGGGGUCCAAUUGCC |
22 |
EBOLAID059 |
PCR primer pair |
Real-time PCR |
PCR primer reverse |
rt_EBOL-r |
21 |
|
AAGCAGTRCCTATACTAGCCA |
14090-14110 | L |
UGGCUAGUAUAGGCACUGCUU |
22 |
EBOLAID060 |
Probe |
Real-time PCR |
Probe (Taqman) |
EBOV_prb |
30 |
|
AGTCCCTTAAAACGGCTACAAGAATGGGAC |
14021-14050 | L |
AGUCCCUUAAAACGGCUACAAGAAUGGCAC |
22 |
EBOLAID061 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
F3 |
20 |
|
GACGGGAGTGAGTGTCTACC |
6387-6406 | GP |
GACGGGAGUGAGUGUCUACC |
23 |
EBOLAID062 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
B3 |
20 |
|
AGCTTGGGGCAGTATCAGAA |
6586-6605 | GP |
UUCUGAUACUGCCCCAAGCU |
23 |
EBOLAID063 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
FL |
15 |
|
GCACATACCGGCACC |
6439-6453 | GP |
GGUGCCGGUAUGUGC |
23 |
EBOLAID064 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
BL |
24 |
|
CTTCCTGTATGATCGACTTGCTTC |
6515-6538 | GP |
CUUCCUGUAUGAUCGACUUGCUUC |
23 |
EBOLAID065 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
F3 |
23 |
|
CAATAAACAACTATTTAAATAAC |
18321-18343 | 3'UTR |
CAAUAAACAACUAUUUAAAUAAC |
24 |
EBOLAID066 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
B3 |
22 |
|
CTGGCAAGATATTGATACAACA |
18530-18551 | 3'UTR |
UGUUGUAUCAAUAUCCUGUCAG |
24 |
EBOLAID067 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
LF |
19 |
|
AATTTTTTGATTATCACGC |
18388-18406 | 3'UTR |
GCGUGAUAAUCAAAAAAUU |
24 |
EBOLAID068 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
F3 |
21 |
|
TGAAGTCAAGAAGCGTGATGG |
787-807 | NP |
UGAAGUCAAGAAGCGUGAUGG |
24 |
EBOLAID069 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
B3 |
21 |
|
AGTCCTTGCTCTGCATGTACT |
1000-1020 | NP |
AGUACAUGCAGAGCAAGGACU |
24 |
EBOLAID070 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
LF |
25 |
|
TGTTTTTTCCACTAGATACTGCTGG |
833-857 | NP |
CCAGCAGUAUCUAGUGGAAAAAACA |
24 |
EBOLAID071 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
LB |
23 |
|
TCCTTCCGAAATTGGTAGTAGGA |
939-961 | NP |
UCCUUCCGAAAUUGGUAGUAGGA |
24 |
EBOLAID072 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
EBOV-F3 |
20 |
|
TGGTTCAAGTGCACAGTCAA |
7086-7105 | GP |
UGGUUCAAGUGCACAGUCAA |
25 |
EBOLAID073 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
EBOV-B3 |
20 |
|
TGTCTGCTCTACGGTGATGT |
7255-7274 | GP |
ACAUCACCGCAGAACAGACA |
25 |
EBOLAID074 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer reverse |
EBOV-LF |
19 |
|
GCAAGGGTTGTCAGATGCG |
7125-7143 | GP |
CGCAUCUAACAACCCUUGC |
25 |
EBOLAID075 |
Loop-Mediated Isothermal Amplification Primers |
Reverse transcription-loop-mediated isothermal ampli?cation |
Primer forward |
EBOV-LB |
26 |
|
ATAATACACCCGTGTATAAACTTGAC |
7203-7228 | GP |
AUAAUACACCCGUGUAUAAACUUGAC |
25 |
EBOLAID076 |
PCR primer pair |
Reverse transcription PCR |
PCR primer forward |
ZEBOV Forward |
23 |
399 |
CGAACTTGACCATCTTGGACTTG |
1552-1574 | NP |
CGAACUUGACCAUCUUGGACUUG |
26 |
EBOLAID077 |
PCR primer pair |
Reverse transcription PCR |
PCR primer reverse |
ZEBOV Reverse |
22 |
399 |
TCCTCGTCGTCCTCGTCTAGAT |
1929-1950 | NP |
AUCUAGACGAGGACGACGAGGA |
26 |
EBOLAID078 |
Primer forward |
Recombinase polymerase amplification (EBOV-RPA) |
Primer forward |
EBO-RPA-F |
30 |
|
TAGTAGGAGAAAAGGCTTGCCTTGAGAAGG |
954-983 | NP |
UAGUAGGAGAAAAGGCUUGCCUUGAGAAGG |
27 |
EBOLAID079 |
Primer reverse |
Recombinase polymerase amplification (EBOV-RPA) |
Primer reverse |
EBO-RPA-R |
31 |
|
TGTTCGCATCAAACGGAAAATCACCATCATG |
1057-1087 | NP |
CAUGAUGGUGAUUUUCCGUUUGAUGCGAACA |
27 |
EBOLAID080 |
Probe |
Recombinase polymerase amplification (EBOV-RPA) |
Probe |
EBO-RPA-P |
32 |
|
TCAAGTACATGCAGAGCAAGGACTGATACAAT |
997-1028 | NP |
UCAAGUACAUGCAGAGCAAGGACUGAUACAAU |
27 |